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GWAS Report for Reniform nematode 1
Experimental Details
Number of germplasm analyzed | 247 |
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Number of loci tested | 700 |
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Platform name | GBS |
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Platform details | Illumina sequencing standard protocol |
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Publication for This Experiment
Dissecting nematode resistance regions in soybean revealedpleiotropic effect of soybean cyst and reniform nematoderesistance genes
(Usovsky et al. 2020)
Usovsky et al., Plant Genome. 2021;14:e20083
10.1002/tpg2.20083
Controlled vocabulary terms associated with the QTL Family
Comments
WGRS data used.
GWAS QTL
The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.
GWAS QTL name | Original name | LOD | Chromosome | Linkage Group |
Reniform nematode 2-g1 | WGRS_3 | 3.3 | Gm03 | N |
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Only WGRS data presented, Only range reported |
Reniform nematode 2-g2 | WGRS_11 | 5.5 | Gm11 | B1 |
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Only WGRS data presented, Only range reported |
Reniform nematode2-g3 | WGRS_18 | 4.4 | Gm18 | G |
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Only WGRS data presented, Only range reported |
Click Here to View Full List of GWAS QTL